I've created two protection groups in my SRM (6.5.1). The protection groups contain separate datastore groups and separate virtual machines. I've created two different recovery plans. Each recovery plan has one of the protection groups in it so that I could fail them over separately. I presume that would be okay correct? I could failover one protection group to the recovery site while the other protection group remains running at the protected site without impact. I'd assume this is possible but wanted a sanity check before I attempted it.
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